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| ANVAYA - Workflow Environment for
high-throughput genome analysis |
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Comprehensive
analysis of heterogeneous genomic data requires a
flexible platform for running complex queries that
is capable of integrating and analyzing large amount
of genomic data in pipeline. Anvaya is a software
application consisting of interface to
Bioinformatics tools and databases in a workflow
environment, to execute the set of analyses tools in
series or in parallel. One of the unique features of
Anvaya is the rules engine that defines rules for
logical connection between the existing tools.
Anvaya offers the user, novel functionalities to
carry out exhaustive comparative analysis via custom
tools which are tools with new functionality not
available in standard tools and built-in PERL
parsers.It also provides a set of 13 pre-defined workflows for frequently used pipelines in genome annotation and comparative genomics ranging from EST assembly and annotation to phylogenetic reconstruction and analysis of next generation sequencing-NGS data (both genome as well as transcriptome) Click
here for detail brochure |
- Bhakti Limaye, Ruma Banerjee, Avik Datta, Harshal Inamdar, Pankaj Vats, Sonal Dahale, Alok Bhandari, E. P. Ramakrishnan, Rajnikanth Tupakula, Sandeep Malviya, Avinash Bayaskar, Renu Gadhari, Sankalp Jain, Vivek Gavane, Rashmi Mahajan, Sunitha K, AND Rajendra Joshi, " ANVAYA: A Workflows Environment For Automated Genome Analysis ", Journal of Bioinformatics and Computational Biology (2012), DOI No: 10.1142/S0219720012410065
- Ruma Banerjee, Pankaj Vats, Sonal Dahale, Sunitha Manjari Kasibhatla and Rajendra Joshi,"Comparative genomics of cell envelope components in Mycobacterium", PloSOne (2011) 10.1371/journal.pone.0019280
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Now with NGS support
